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SRX007016: Whole Genome Sequencing of giant panda
5 ILLUMINA (Illumina Genome Analyzer II) runs: 51.2M spots, 7.2G bases, 5.5Gb downloads

Design: Standard Solexa protocol
Submitted by: Beijing Genome Institute (BGI)
Study: Giant panda genome sequencing project
show Abstracthide Abstract
The giant panda, <i>Ailuropoda melanoleuca</i>, is a critically endangered mammal confined to portions of six isolated mountain ranges in south-central China. There are fewer than 3,000 giant pandas currently alive in the wild and fewer than two hundred in captivity. The giant panda is unusual for feeding almost exclusively on bamboo plants though being evolutionarily related to meat-eating carnivores such as bears and dogs. The genome sequence of the giant panda will aid conservation efforts and the study of interactions between genetics and diet. The panda genome has 20 pairs of autosomes and two sex chromosomes. The first draft of this genome has approximately 73-fold coverage of the estimated 2.46 Gb genome. The sequence was derived from a female captive-bred panda, named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding.
Sample: Jingjing, a 3-year old female panda
SAMN00008160 • SRS004381 • All experiments • All runs
Library:
Name: PAfwDAADIAAPE
Instrument: Illumina Genome Analyzer II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward46  reverse

Experiment attributes:
center_name: BGI
Runs: 5 runs, 51.2M spots, 7.2G bases, 5.5Gb
Run# of Spots# of BasesSizePublished
SRR0198746,709,889590.5M378Mb2009-12-15
SRR01987511,637,0931.7G1.4Gb2009-12-15
SRR01987610,265,1041.5G1.2Gb2009-12-15
SRR01987711,071,8341.7G1.2Gb2009-12-15
SRR01987811,480,7651.7G1.3Gb2009-12-15

ID:
7276

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